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...mc=2142138}}</ref> The database is helpful for the comparison of [[protein structure]]s. [[Category:Protein structure]] ...

|logo = [[file:CATH - Protein Structure Classification Database.png|200px]] |description =Protein Structure Classification ...

...web portal]] that allows users to search many discrete [[health sciences]] databases at the [[National Center for Biotechnology Information]] (NCBI) website.<re ...s]], and references. The Entrez system can provide views of [[gene]] and [[protein]] sequences and [[chromosome]] maps. Some textbooks are also available onli ...

...24 |title=The Protein Information Resource (PIR) and the PIR-International Protein Sequence Database |journal=Nucleic Acids Research |volume=25 |pages=24–27 | ...uences, and for the inference of evolutionary histories from alignments of protein sequences.<ref>{{cite journal |last1=Izet |first1=M |title=The Most Influen ...

{{Short description|Study of the structure of every protein in a genome}} ...000th protein structure.jpg|thumb|An example of a protein structure from [[Protein Data Bank]].]] ...

...ture. Other databases include the [[NCBI Epigenomics]] database. All these databases are available online through the [[Entrez]] search engine. NCBI was directe ...</ref> GenBank coordinates with individual laboratories and other sequence databases, such as those of the [[European Molecular Biology Laboratory]] (EMBL) and ...

{{see also|Protein structure database}} ...uences stored on a computer. The [[UniProt]] database is an example of a [[protein sequence]] database. As of 2013 it contained over 40 million sequences and ...

{{short description|Three dimensional shape of a protein}} ...the article about tertiary structure in nucleic acid|Nucleic acid tertiary structure}} ...

...queries and provides simplified access to web-distributed resources for [[protein]] and [[nucleic acid]] analysis. ...numbers...). Alerts also exist to warn wrong selection of choices (DNA/RNA/Protein). Results obtained from 'sequence manipulation' e.g. translation, can be fu ...

...nformation about a query in the large and growing number of bioinformatics databases. The access to these kinds of tools is either web based or locally download ...ounts of [[primary sequence]] information, as well as [[tertiary structure|protein structures]], gene annotations, [[sequence alignment]]s, and other common b ...

{{short description|Method of protein structure prediction}} ...iology)#Homology of sequences in genetics|homologous]] proteins with known structure. ...

...ref> Information contained in biological databases includes gene function, structure, localization (both cellular and chromosomal), clinical effects of mutation ...es (for physiology, enzyme activities, phenotypes, ecology etc), taxonomic databases (for species and other taxonomic ranks), images and other media, or specime ...

..."[[transcriptome|transcriptomic]]" ([[expressed sequence tag|ESTs]]) or [[protein]] origin. For proteins, [[homologous sequence]]s are typically grouped into [[protein family|families]]. For EST data, clustering is important to group sequence ...

{{short description|Database of protein sequences and functional information}} ...' is the '''Uni'''versal '''Prot'''ein resource, a central repository of [[protein]] data created by combining the Swiss-Prot, TrEMBL and PIR-PSD [[database]] ...

{{Short description|Prediction of where a protein resides in a cell}} ...just protein localization prediction) involves the prediction of where a [[protein]] resides in a [[cell (biology)|cell]], its [[subcellular localization]]. ...

|title = Protein Data Bank ...roscopy|cryoEM]]|[[Nuclear magnetic resonance spectroscopy of proteins|NMR Structure Determination]]}} ...

{{Short description|Chemical structure related to toxic properties of chemical}} A '''toxicophore''' is a [[chemical]] structure or a portion of a structure (e.g., a [[functional group]]) that is related to the toxic properties of a ...

=== Databases === ...y (2D gel repository), [[PROSITE]] (protein families and domains), MyHits (protein sequences and motifs), [[Bgee]] (database to retrieve and compare gene exp ...

* [[Data structure]]s – The organization and manipulation of data. === Databases === ...

...sually from multiple diverse sources. They differ from ordinary biological databases in that they display data in a graphical format, with genome coordinates on ...540-37653-8 |editor1=Michael Speicher |edition=4th |pages=905–920 |chapter=Databases and Genome Browsers |editor2=Stylianos E. Antonarakis |editor3=Arno G. Motu ...