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- {{short description|Compilation of software used to produce phylogenetic trees}} ...logenetics software''' is a compilation of [[computational phylogenetics]] software used to produce [[phylogenetic tree]]s. Such tools are commonly used in [[c ...44 KB (5,721 words) - 18:09, 8 June 2025
Page text matches
- [[Category:Phylogenetics software]] {{science-software-stub}} ...606 bytes (79 words) - 18:26, 11 December 2023
- ...ode]], software mechanism in which a software emulates an older version of software * [[License compatibility]], of software licenses ...3 KB (327 words) - 20:26, 3 October 2025
- *[[Software Productivity Research]], a software benchmarking company *[[Subtree pruning and regrafting]], a method in computational phylogenetics ...2 KB (235 words) - 09:46, 23 May 2025
- {{Infobox Software|name=MAVID|developer=Nicolas Bray ([[UC Berkeley]]), [[Lior Pachter]] ([[UC [[Category:Phylogenetics software]] ...2 KB (255 words) - 22:22, 26 April 2024
- ...ral logarithm of the [[likelihood function#|likelihood]] ratio, as used in phylogenetics * [[Technical support]], help for computer hardware, software, or electronic goods ...2 KB (230 words) - 11:44, 14 April 2025
- {{Infobox Software '''Jalview''' is a piece of [[bioinformatics]] software that is used to look at and edit [[multiple sequence alignment]]s. The prog ...3 KB (391 words) - 18:01, 21 February 2023
- ...being run as a project at the [[Wellcome Trust Sanger Institute]], and its software is housed on [[SourceForge]] as "TreeSoft". * [[Phylogenetics]] ...4 KB (548 words) - 21:16, 29 July 2023
- ...etic]] networks. Phylogenetic networks can be inferred and visualised with software such as [[SplitsTree]],<ref name="SplitsTree">{{cite journal | vauthors = H ...binary sequences, [[median graph|median networks]] from a set of [[Split (phylogenetics)|split]]s, optimal realizations and reticulograms from a [[distance matrix] ...10 KB (1,287 words) - 17:56, 20 October 2023
- * [[Split (phylogenetics)]], a bipartition of a set of taxa in phylogenetics * [[split (Unix)]], a Unix software utility (command) for dividing input into multiple files ...4 KB (551 words) - 01:37, 15 June 2025
- ...rsimony *and other methods</ref> [[Bayesian inference in phylogeny#MrBayes software|MrBayes]],<ref name="mrbayes">[http://mrbayes.csit.fsu.edu/ MrBayes]</ref> *[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Phylogenetics:_NEXUS_Format NEXUS format] — a good description of the format and it ...5 KB (681 words) - 22:56, 26 January 2025
- |journal=Molecular Phylogenetics and Evolution ==Software== ...5 KB (728 words) - 10:00, 24 June 2025
- * [[Spatiotemporal Epidemiological Modeler]], free software * [[Stem group]], or crown group, in phylogenetics ...3 KB (370 words) - 01:40, 15 October 2024
- *[[phylogenetics]] ...ectropherogram peak heights reported by different versions of the GeneScan Software] ...3 KB (404 words) - 12:40, 9 April 2025
- *[[Phylogenetics]] ...video game)]], first in a series from Interplay Entertainment and Parallax Software ...4 KB (571 words) - 02:25, 14 October 2025
- ...emistry]]. The individual resources (databases, web-based and downloadable software tools) are hosted in a decentralized way by different groups of the SIB Swi ...e=SIB Resources|url=https://www.sib.swiss/research-infrastructure/database-software-tools/sib-resources|access-date=2020-10-27|website=sib.swiss|language=en-gb ...5 KB (636 words) - 09:17, 15 March 2024
- ...phylogenetic]] analysis is expressed in a [[phylogenetic tree]]. Molecular phylogenetics is one aspect of '''molecular systematics''', a broader term that also incl ...c.) throughout various branches in the tree of life (evolution). Molecular phylogenetics makes inferences of the evolutionary relationships that arise due to molecu ...18 KB (2,491 words) - 16:28, 25 May 2025
- {{Infobox software | genre = [[Phylogenetics]] ...17 KB (2,299 words) - 05:04, 22 June 2025
- {{Short description|Term used in computational phylogenetics}} '''Perfect phylogeny''' is a term used in [[computational phylogenetics]] to denote a [[phylogenetic tree]] in which all internal nodes may be labe ...14 KB (1,960 words) - 00:16, 18 July 2024
- {{Short description|DNA and protein sequence alignment software package}} {{About|the FASTA software package|the file format|FASTA format}} ...11 KB (1,667 words) - 18:53, 10 January 2025
- ...18583591 | doi = 10.1126/science.320.5884.1716 | s2cid = 206580993}}</ref> Phylogenetics compares and analyzes the sequences of single genes, or a small number of g ...ion]]). <ref>{{Cite book| vauthors = Simion P, Delsuc F, Phillipe H |title=Phylogenetics in the Genomic Era|year=2020|url=https://hal.inria.fr/PGE|pages=2.1.1–2.1.3 ...15 KB (1,974 words) - 19:55, 18 June 2025