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{{Short description|File format used in bioinformatics}} ...r|the NeXus format used in neutron, x-ray, and muon scattering|Nexus (data format)}} ...

...tp033 }}</ref> and its development is supported by the [[Biotechnology and Biological Sciences Research Council]] (BBSRC) and [[Wellcome Trust]]. ...nalysis of genetic variation from public databases or local [[Variant Call Format]] (VCF) files. Jalview connects to many external [[web services]] to import ...

...I.NYT/> one of the original authors of the [[BLAST (biotechnology)|BLAST]] sequence alignment program<ref name=SciWatch>{{cite web ..., 2023 }}</ref> GenBank coordinates with individual laboratories and other sequence databases, such as those of the [[European Molecular Biology Laboratory]] ( ...

...achi|first2=I.|last3=Nakamura|first3=Y.|title=The International Nucleotide Sequence Database Collaboration|journal=Nucleic Acids Research|date=23 November 2010 ...ermines the similarity between the sequence query and the sequences in the sequence database.<ref>{{cite book |last1=Sung |first1=Wing-Kin |title=Algorithms in ...

{{Short description|File format for protein data}} {{redirect|.pdb|the Microsoft file format|Program database|the new file format called PDBx/mmCIF|mmCIF}} ...

{{Short description|DNA and protein sequence alignment software package}} {{About|the FASTA software package|the file format|FASTA format}} ...

...nome@home FAQ | author = Pande lab | publisher = [[Stanford University]] | format = FAQ | accessdate = 2011-09-05 | archive-url = https://web.archive.org/web Following the [[Human Genome Project]], scientists needed to know the biological and medical implications of the resulting wealth of genetic information. Ge ...

.../archive.org/details/molecularcloning0000samb/page/5 }}</ref> and displays sequence dependence (C>A=T>G).<ref>{{cite journal | vauthors = Henikoff S | title = ...ancient. Exonucleases evolved early in the history of life and have vital biological roles.<ref>{{cite journal | vauthors = Lovett ST | title = The DNA Exonucle ...

...isits to many smaller sites or direct literature searches to compile. Many sequence profiling tools are software portals or gateways that simplify the process ...as well as [[tertiary structure|protein structures]], gene annotations, [[sequence alignment]]s, and other common bioinformatics tasks. ...

...nt]], [[protein structure]], [[population genetics]], [[phylogenetics]], [[sequence motif]]s, and [[machine learning]]. Biopython is one of a number of Bio* pr | title = Py ''Cogent'': A toolkit for making sense from sequence ...

...ation in order to investigate the genetic basis of disease, evolution, and biological processes.<ref name="wang">{{cite journal |author=Jun Wang |author2=Lei Kon ...rom ordinary biological databases in that they display data in a graphical format, with genome coordinates on one axis with annotations or space-filling grap ...

...service]]s used in [[bioinformatics]]. It allows interoperability between biological data hosts and analytical services by annotating services with terms taken ...nteroperable behaviours seen in Moby are achieved through the Object (data-format) and Namespace (data-type) ontologies. ...

{{Short description|Method of Biological categorization}} ...ded device that aids in the [[identification (biology)|identification]] of biological organisms. ...

...analysis of all types of genomic data, such as SAGE, [[Sequence (biology)|sequence]], or [[Single nucleotide polymorphism|SNP]] data. * Facilitate the inclusion of [[genome annotation|biological metadata]] in the analysis of genomic data, e.g. literature data from [[Pub ...

{{short description|File format for DNA or protein sequences}} {{Infobox file format ...

...2 | pmc = 3017387 | doi = 10.1093/gbe/evq077 }}</ref> between [[nucleotide sequence]]s, [[gene]]s, [[chromosome]]s, [[genome]]s, or [[species]].<ref name="netw ...ard format for representing phylogenetic networks is a variant of [[Newick format]] which is extended to support networks as well as trees.<ref name="ext_new ...

...e]] and [[Peptide sequence|peptide]] sequence data from local and remote [[Biological database|databases]] '''Example of accessing GenBank to retrieve a sequence:''' ...

...lent]] structure of the entire molecule. For this reason, the nucleic acid sequence is also termed the [[Biomolecular structure#Primary structure|primary struc The sequence represents '''genetic information'''. Biological [[deoxyribonucleic acid]] represents the [[information]] which directs the ...

{{short description|DNA sequence database}} ...equences for more than 300,000 organisms with supporting bibliographic and biological annotation. ...

...to indicate the number of bytes in the sequence so that the length of the sequence can be determined without examining the continuation bytes. ==Unary coding in biological networks== ...