Deferribacteraceae: Difference between revisions

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| authority = Huber and Stetter 2002
| authority = Huber and Stetter 2002
| subdivision_ranks = [[Genera]]
| subdivision_ranks = [[Genera]]
| subdivision =  
| subdivision = [[#Phylogeny|See text]]
See text
| synonyms =
| synonyms =
* Deferribacterota:
* Deferribacterota:
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==Phylogeny==
==Phylogeny==
The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LSPN) <ref>See the [[List of Prokaryotic names with Standing in Nomenclature]]. Data extracted from the {{cite web | url=http://www.bacterio.net/-classifphyla.html#Deferribacteres |title=Deferribacteres | access-date=2013-03-20}}</ref>
The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LSPN)<ref name=LPSN>{{lpsn3|family/Deferribacteraceae|Deferribacteraceae}}</ref> and [[National Center for Biotechnology Information]] (NCBI).<ref name=NCBI>{{cite web |author=Schoch CL |display-authors=et al. |url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?command=show&mode=tree&id=191393&lvl= |title=Deferribacteraceae |accessdate=2025-06-05 |publisher=[[National Center for Biotechnology Information]] (NCBI) taxonomy database}}</ref>
<ref>See the [[National Center for Biotechnology Information|NCBI]] [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=200930&lvl=6&lin webpage on Deferribacteres] Data extracted from the {{cite web | url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=200930&lvl=3&p=mapview&p=has_linkout&p=blast_url&p=genome_blast&srchmode=1&keep=1&unlock | title=NCBI Taxonomy Browser | publisher=[[National Center for Biotechnology Information]] | access-date=2013-03-20}}</ref>


* '''Phylum Deferribacterota''' <small>Garrity and Holt 2021</small>
* '''Phylum Deferribacterota''' <small>Garrity and Holt 2021</small>
** '''Class Deferribacteres''' <small>Huber & Stetter 2002</small>
** '''Class Deferribacteres''' <small>Huber & Stetter 2002</small>
*** '''Order Deferribacterales''' <small>Huber & Stetter 2002</small>
*** '''Order Deferribacterales''' <small>Huber & Stetter 2002</small>
**** Genus ?"''Ca.'' [[Rimicarispirillum]]''" <small>Aubé et al. 2022</small>
**** Genus ?"''Ca. [[Rimicarispirillum]]''" <small>Aubé et al. 2022</small> {"Microvillispirillaceae" <small>Aubé et al. 2022</small>}
**** Family Calditerrivibrionaceae <small>Spring et al. 2022</small>
**** Family Calditerrivibrionaceae <small>Spring et al. 2022</small>
**** Family Deferribacteraceae <small>Huber & Stetter 2002</small>
**** Family Deferribacteraceae <small>Huber & Stetter 2002</small>
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|-
|-
! colspan=1 | 16S rRNA based [[The All-Species Living Tree Project|LTP]]_10_2024<ref>{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 December 2024}}</ref><ref>{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree |access-date=10 December 2024}}</ref><ref>{{cite web|title=LTP_10_2024 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf |access-date=10 December 2024}}</ref>
! colspan=1 | 16S rRNA based [[The All-Species Living Tree Project|LTP]]_10_2024<ref>{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 December 2024}}</ref><ref>{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree |access-date=10 December 2024}}</ref><ref>{{cite web|title=LTP_10_2024 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf |access-date=10 December 2024}}</ref>
! colspan=1 | 120 marker proteins based [[Genome Taxonomy Database|GTDB]] 09-RS220<ref name="about">{{cite web |title=GTDB release 09-RS220 |url=https://gtdb.ecogenomic.org/about#4%7C |website=[[Genome Taxonomy Database]]|access-date=10 May 2024}}</ref><ref name="tree">{{cite web |title=bac120_r220.sp_labels |url=https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree |website=[[Genome Taxonomy Database]]|access-date=10 May 2024}}</ref><ref name="taxon_history">{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=[[Genome Taxonomy Database]]|access-date=10 May 2024}}</ref>
! colspan=1 | 120 marker proteins based [[Genome Taxonomy Database|GTDB]] 10-RS226<ref name="about">{{cite web |title=GTDB release 10-RS226 |url=https://gtdb.ecogenomic.org/about#4%7C |website=[[Genome Taxonomy Database]]|access-date=1 May 2025}}</ref><ref name="tree_bac">{{cite web |title=bac120_r226.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release226/226.0/auxillary_files/bac120_r226.sp_labels.tree |website=[[Genome Taxonomy Database]]|access-date=1 May 2025}}</ref><ref name="taxon_history">{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=[[Genome Taxonomy Database]]|access-date=1 May 2025}}</ref>
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Latest revision as of 03:04, 29 December 2025

Template:Short description Template:Automatic taxobox

The Deferribacteraceae are a family of gram-negative bacteria which make energy by anaerobic respiration.[1]

Description

Deferribacteraceae are rod-shaped, although the rods may be straight or bent. They are gram-negative. Deferribacteraceae perform anaerobic respiration using iron, manganese, or nitrate. They can also produce energy by fermentation. The type genus of the family is Deferribacter.[1]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LSPN)[2] and National Center for Biotechnology Information (NCBI).[3]

  • Phylum Deferribacterota Garrity and Holt 2021
    • Class Deferribacteres Huber & Stetter 2002
      • Order Deferribacterales Huber & Stetter 2002
        • Genus ?"Ca. Rimicarispirillum" Aubé et al. 2022 {"Microvillispirillaceae" Aubé et al. 2022}
        • Family Calditerrivibrionaceae Spring et al. 2022
        • Family Deferribacteraceae Huber & Stetter 2002
        • Family Deferrivibrionaceae Zavarzina et al. 2023
        • Family Flexistipitaceae Spring et al. 2022
        • Family Geovibrionaceae Cavalier-Smith 2020
        • Family Mucispirillaceae Spring et al. 2022
16S rRNA based LTP_10_2024[4][5][6] 120 marker proteins based GTDB 10-RS226[7][8][9]

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History

The family was first described in 2001 in order to hold the genera Deferribacter, Flexistipes, and Geovibrio.[1]

See also

References

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  1. ↑ a b c Huber, H., and Stetter, K.O. "Family I. Deferribacteraceae fam. nov." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 1 (The Archaea and the deeply branching and phototrophic Bacteria) (D.R. Boone and R.W. Castenholz, eds.), Springer-Verlag, New York (2001). pp. 465-466.
  2. ↑ Template:Lpsn3
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