View source for Wiki143:WikiProject Molecular Biology/Metabolic Pathways task force/templates

{|cellspacing=10 width=100% style="border:1px solid #a79c83; background-color:#faf8f1; border-radius:10px;"
|-
|style="color:#000"|This of is a list of templates useful for the wikiproject; see further below for the code for each template.
|-
|}
{{TOC right}}
'''Templates available:'''
*''Reaction Templates:''
:*[[Template:Enzymatic reaction]]
:*[[Template:Complex enzymatic reaction]]
*''Navigation Templates:''
:*[[Template:Glycolysis]]
:*[[Template:Citric acid cycle]]
:*[[Template:Urea cycle]]
:*[[Template:Cellular respiration]]
:*[[Template:Metabolism]]
:*[[Template:Protein biosynthesis]]
:*[[Template:Glucose metabolism]]
:*[[Template:Metabolic pathways]]
*''Reference Templates''
:*[[Template:KEGG enzyme]]
:*[[Template:KEGG compound]]
:*[[Template:KEGG reaction]]
:*[[Template:PDB]]
*''Article Tags:''
:*<nowiki>{{WikiProject Molecular Biology|class=|MCB=yes|MCB=yes|MCB-importance=|MCB=yes|MCB-importance=|Metabolism-pathways=yes|Metabolism-pathways-importance=|}}</nowiki>
:*or <nowiki></nowiki>
:Which will look like this:
:*{{metabolism-stub}}
*''User Tags:''
:*[[Wikipedia:Wikiproject Metabolic Pathways/Userbox]]
*''Infoboxes''
:*[[Template:Protbox]]
:*[[Template:Chembox]]

==Reaction templates==
===Enzymatic Reaction===

'''''Current status: Use.''' Complete and ready for use.''

<nowiki>{{</nowiki>Enzymatic Reaction<br />
|forward_enzyme=<br />
|reverse_enzyme=<br />
|substrate=<br />
|product=<br />
|reaction_direction_(forward/reversible/reverse)=<br />
|minor_forward_substrate(s)=<br />
|minor_forward_product(s)=<br />
|minor_reverse_substrate(s)=<br />
|minor_reverse_product(s)=<br />
|substrate_image=<br />
|product_image=<br />
<nowiki>}}</nowiki>

''Gives, for example:''

{{Enzymatic Reaction
|forward_enzyme=[[Hexokinase]]
|reverse_enzyme=
|substrate=[[Glucose]]
|product=[[Glucose-6-phosphate]]
|reaction_direction_(forward/reversible/reverse)=forward
|minor_forward_substrate(s)=[[Adenosine triphosphate|ATP]]
|minor_forward_product(s)=[[Adenosine diphosphate|ADP]]
|minor_reverse_substrate(s)=
|minor_reverse_product(s)=
|substrate_image=D-glucose wpmp.svg
|product_image=Alpha-D-glucose-6-phosphate wpmp.png
}}

===Complex Enzymatic reaction===

'''''Current status: Use.''' Complete and ready for use.''

<nowiki>{{</nowiki> Complex enzymatic reaction<br />
|major_substrate_1=<br />
|major_substrate_1_stoichiometric_constant=<br />
|major_substrate_1_image=<br />
|major_substrate_2=<br />
|major_substrate_2_stoichiometric_constant=<br />
|major_substrate_2_image=<br />
|major_product_1=<br />
|major_product_1_stoichiometric_constant=<br />
|major_product_1_image=<br />
|major_product_2=<br />
|major_product_2_stoichiometric_constant=<br />
|major_product_2_image=<br />
|foward_enzyme=<br />
|reverse_enzyme=<br />
|reaction_direction_(forward/reversible/reverse)=<br />
|minor_foward_substrate(s)=<br />
|minor_foward_product(s)=<br />
|minor_reverse_product(s)=<br />
|minor_reverse_substrate(s)=<br />
<nowiki>}}</nowiki>

''Gives, for example:''

{{ Complex enzymatic reaction
|major_substrate_1=A
|major_substrate_1_stoichiometric_constant=N<sub>A</sub>
|major_substrate_1_image=Inheritance_mixins.svg
|major_substrate_2=B
|major_substrate_2_stoichiometric_constant=N<sub>B</sub>
|major_substrate_2_image=
|major_product_1=C
|major_product_1_stoichiometric_constant=N<sub>C</sub>
|major_product_1_image=
|major_product_2=D
|major_product_2_stoichiometric_constant=N<sub>D</sub>
<!--  Commented out because image was deleted: |major_product_2_image=D.png -->
|foward_enzyme=E
|reverse_enzyme=F
|reaction_direction_(forward/reversible/reverse)=reversible
|minor_foward_substrate(s)=G
|minor_foward_product(s)=H
|minor_reverse_product(s)=I
|minor_reverse_substrate(s)=J
}}

==Navigation templates==

<nowiki>{{Glycolysis}}</nowiki>

{{Glycolysis}}

<nowiki>{{Citric acid cycle}}</nowiki>

{{Citric acid cycle}}

<nowiki>{{Urea cycle}}</nowiki>

{{Urea cycle}}

<nowiki>{{Metabolism}}</nowiki>

{{Metabolism}}

<nowiki>{{Protein biosynthesis}}</nowiki>

{{Protein biosynthesis}}

<nowiki>{{Glucose metabolism}}</nowiki>

{{Glucose metabolism}}

<nowiki>{{Metabolic pathways}}</nowiki>

{{Metabolic pathways}}

==Reference templates==
<nowiki>{{KEGG enzyme|2.7.1.69}}</nowiki>

{{KEGG enzyme|2.7.1.69}}

<nowiki>{{KEGG compound|C00668}}</nowiki>

{{KEGG compound|C00668}}

<nowiki>{{KEGG reaction|R00959}</nowiki>

{{KEGG reaction|R00959}}

<nowiki>{{PDB|1A0S}}</nowiki>

{{PDB|1A0S}}

==Common Minor Substrates/Products==
H<sub>2</sub>O
:<nowiki>H<sub>2</sub>O</nowiki>

CO<sub>2</sub>
:<nowiki>CO<sub>2</sub></nowiki>

Inorganic Phosphate: P<sub>i</sub>
:<nowiki>P<sub>i</sub></nowiki>

ATP

ADP

CoA

==Article tags==
===Stub Tag===

'''''Current status: Use.''' Complete and ready for use.''

<nowiki>{{metabolism-stub}}</nowiki>

{{metabolism-stub}}

===Article of Interest===

'''''Current status: Use.''' Currently as a task force under WPMCB.''

:''For talk pages''

:*<nowiki></nowiki>
:*or <nowiki>{{WikiProject Molecular Biology|class=|MCB=yes|MCB-importance=|MCB=yes|MCB-importance=|mp=yes|mp-importance=|comment}}</nowiki>
:Which will look like this:

==User Tags==
<nowiki>{{Wikipedia:Wikiproject Metabolic Pathways/Userbox}}</nowiki>

{{Wikipedia:Wikiproject Metabolic Pathways/Userbox}}
<br style="clear: both;" />

==Infoboxes==

===Protbox===
<nowiki>{{</nowiki>Protbox<br />
|Name=<br />
|Photo=<br />
|Caption=<br />
|HGNCid=<br />
|Symbol=<br />
|AltSymbols=<br />
|Chromosome=<br />
|Arm=<br />
|Band=<br />
|LocusSupplementaryData =<br />
|Gene=<br />
|Gene_type=<br />
|Protein_length=<br />
|Molecular_weight=<br />
|Structure=<br />
|Type=<br />
|Functions=<br />
|Domains=<br />
|Motifs=<br />
|Alternative_products=<br />
|Catalytic_activity=<br />
|Cofactors=<br />
|Enzyme_regulation=<br />
|Km=<br />
|Vmax=<br />
|Biophysicochemical_properties=<br />
|Diseases=<br />
|Pharmaceuticals=<br />
|Biotechnology=<br />
|Taxa=<br />
|Cells=<br />
|Location=<br />
|Mods=<br />
|Names=<br />
|Pathways=<br />
|Interactions=<br />
|Actions=<br />
|Agonists=<br />
|Antagonists=<br />
|Accession_numbers=<br />
|EntrezGene=<br />
|OMIM=<br />
|RefSeq=<br />
|UniProt=<br />
|PDB=<br />
|ECnumber=<br />
|Codes=<br />
|Review=<br />
|Pages=<br />
<nowiki>}}</nowiki>

===Chembox===
<nowiki>{{</nowiki>chembox<br />
|ImageFile=<br />
|IUPACName=<br />
|OtherNames=<br />
|Abbreviations=<br />
|Formula=<br />
|MolarMass=<br />
|CASNo=<br />
|Density=<br />
|Solubility=<br />
|MeltingPt=<br />
|BoilingPt=<br />
|pKa=<br />
|pKb=<br />
|IsoelectricPt=<br />
|DeltaHf=<br />
|DeltaHc=<br />
|EINECS=<br />
|PubChem=<br />
|SMILES=<br />
|InChI=<br />
<nowiki>}}</nowiki>